Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CADPS2_0017600

Sequence Length

422 nt

GC Content

0.3957

GAAAGAAAAUUCCCCAAAUUUAUAGCAAAAGAUAUGGAGAAUAUGUAUAUAGAAGAGUUGCGGUCUUCAGUGAAUUUGCUAAUGGCCAAUUUGGAAAGUCUUCCAGUUUCGAAAGGUGGUCCGGAAUUUAAAUUACAAAAAUUAAAACGUUCACAGAACUCUGCAUUUUUGGACAUAGGAGAUGAGAAUGAGAUUCAGCUGUCAAAGUCCGACGUGGUACUGUCAUUCACCUUAGAGGACAACUUUAUUUUAUGCUUAUGACAUCAGCUACAGAGAGACUGGGGAAGAGAAGAUGAAAAAUAGAUUGUCAUAAUGGAAGUGCAAGGCCUGAAGUCAGUUGCUCCCAAUCGAAUUGUUUACUGUACAAUGGAAGUGGAAGGAGAAAAACUUCAGACAGACCAGGCCGAAGCCUCAAGGCCACA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-79.90 kcal/mol

Ensemble Metrics

Free Energy: -90.25

Frequency: 0.0000

Diversity: 146.50

Structure Visualization

Structure Prediction

MFE Structure Prediction

((....(((((((.........(((((((.....((((((...((((...........)))).)))))).....)))))))..(((((.(((.((((.(.....).)))).)))..))))).)))))))...................((((...))))))((.....((((((((((..((............))..))))....))))))..((((.(((((.....((......(((((.((((((((...(((......((((((......)).)))).......)))....))))))))))))).....)).((.((...))))(((((...((.((.(((.....(((((.......))))).....))).)).))....))))).)))))))))((((..........)))).))

Thermodynamic Ensemble Prediction

......,,{{({,{{,.,,,,.(((((({.....((((({...{(((..,.....,..)))}.)))))).....})))))}.,(((({.{{({(((,.,.,|,|}.}}||.,||,,|||||||||||||.,.,,.....,,}}.....{{{{.,.)))}.}||||,|||||||{...{{{,.{{{,,.{,,..,))}.,}.)}...})))||,{{{{{.,{|||.,,|,||,,.,,,(((((,({{{((((,{.{((.{..,.((((((......)).)))),,.....}}}}}}})},}}))}))))).....}},,|,||..{{{((({{((,.,((.((,(((.....(((((.......))))).....))).}},))....)))))})}),}}})}||||...||,....))))...