Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CCDC66_0001800

Sequence Length

255 nt

GC Content

0.4078

UGUCUUAAAGUCUUUGCUUGUCUGUGGAUAGAACCCAGUUUGGAUGAUGUACCACUUUAUCCUUCAACUCUAAGCCCUUGAUGGCUUUACUUGCAGGUUUAAUUAAGGUGAAGAAGUUGCUGGAGUACCCGAAAUAUCACUCAAUAAAUAGAGAGAAUGAAUGGAAACCAGCUGAUAUAUUCAGUACUCUGGGGGAAAGGGAAUGUGAUAGAAGUUCGUUGGAAGCAAAAAAAGCCCAGUGGAGGAAAGAGCUAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-48.10 kcal/mol

Ensemble Metrics

Free Energy: -53.64

Frequency: 0.0001

Diversity: 89.15

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((......(((((.((...(((.((......)))))...((((((.((...)).))))))....((((((.((....(((..((((((((.............))))))))..)))))))))))..(((.....((.(((........))).)).....)))...((((((((.....))))....)))))).)))))......))))..(((((..(((..((.......)))))..........)))))..

Thermodynamic Ensemble Prediction

{{{{......(((((.(({..(((.((......||||}..,{(((((.{{..,}}.}}}|||..({(((((..(({,{{(((,{(((,,,,,..,}}}...}}}})))),,))..))))|||||||{{,,({,{{{((,(((........))).,......{||...}}},{|||}},.,)),))}}})))))).}}))),...,.)}))..{{{||,||,|..,|.......,))))}..}}}.}},))}))..