Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CCDC66_0001900

Sequence Length

273 nt

GC Content

0.3480

UGUCUUAAAGUCUUUGCUUGUCUGUGGAUAGAACCCAGUUUGGAUGAUGUACCACUUUAUCCUUCAACUCUAAGCCCUUGAUGGCUUUACUUGCAGGUUUAAUUAAGGUGAAGAAGUUGCUGGAGUACCCGAAAUAUCACUCAAUAAAUAGAUGAACAGGUUGCUUUAAAGAAGAAAGAAAAAGAAGUUUCUGAAAAAUGGAAUGAUCCUUGGAAAAAAUCUGAAAGUGAUAAAAUAAUAUGGGAAAAACAUCAAAUUCUUGACCAAUCUAGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-39.40 kcal/mol

Ensemble Metrics

Free Energy: -46.49

Frequency: 0.0000

Diversity: 104.31

Structure Visualization

Structure Prediction

MFE Structure Prediction

...((((((((....))))....(((((((..(.(((...))).)..))).)))).....(((.(((....(((((......)))))...))).))).........(((.(((((.(((.((.....((((...(((((((...............((((..(((((................))))).))))......(((....)))(((((.....))))).)))))))........)))).....)).))).))))).)))....))))

Thermodynamic Ensemble Prediction

(.{(({{((((.,,,(,{{{{{{({{{,,....,|||,.,{((,((({({...,,.,,,|((..((({{{{.,(((,{{{{{|||||...,...}))},..}}}}}}}|.,|}||}}|}.,|}}...,,,,..,|||||,|},,...,,}}}}}}.||||..}}||},,,},....{{{,.......}|))}.......{{{....})){|{{{.....)))},.,}}))},........}}}}.....}},}},.}}})).)||......))