Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CCDC66_0008000

Sequence Length

214 nt

GC Content

0.3692

AUGAACAGGUUGCUUUAAAGAAGAAAGAAAAAGAAGUUUCUGAAAAAUGGAAUGAUCCUUGGAAAAAAUCUGAAAGUGAUAAAAUAAUAUGGGAAAAACAUCAAAUUCUUGACCAAUCUAGGCUCUUCAAGCAUUCUAUCACAGUCUCGUAGCCAGGUUAUGGUGGUCCAAGCUGAUGGGGCAUUCACAACUUAGAGCUAGUCAGACUUUAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-31.80 kcal/mol

Ensemble Metrics

Free Energy: -37.67

Frequency: 0.0001

Diversity: 57.62

Structure Visualization

Structure Prediction

MFE Structure Prediction

((..........((((.......))))........))((((((.....(((....)))(((((.....)))))..((((((.......(((.......)))..(((.(((((((......))....))))).))).))))))(((((..((((((((((.(((((.((((......)))).)).))).))))).).))))...)))))))))))

Thermodynamic Ensemble Prediction

((....,,,,(,((({...{{|||,||,,......})((({{{....,(((,,..}}|(((((.....||},,..|,|||.........{{{......,.}|,..,,||}||((......)).}}})))))))})))))},,(((((..((((((((((.(((((.((((......)))).))}})).))))).).))))...)))))}}})})