Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CCDC66_0011500

Sequence Length

217 nt

GC Content

0.5991

GUUGAUUGGGCCCAUACUCUAGGAGGAGUGCUCAGGUGCCAAUGGUGGUGUCCUGGGCAGGGCAGUCCCCAGGUCCCUGGACCAAUGUGCUUGGUUACUGGUGGAGAUGCAGCAAGGCUGGGCAGACCUGCCCCCGGGUUCCCAAGGUGUUGUGUGCAGUGCUGGCUGUUGUAGGCAGGGGUGGGAUGAUUUCCCAGGCCACCAGCAGAAUGCUUAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-78.50 kcal/mol

Ensemble Metrics

Free Energy: -82.90

Frequency: 0.0008

Diversity: 60.56

Structure Visualization

Structure Prediction

MFE Structure Prediction

((..(((((((((..(((((....)))))((((((((((((....))))).))))))).)))).....((((....)))).)))))..))(((((..(((.(((...((((((((.((((((..((((((....)))))))))..))).)))).)))).((((.((....)).))))((..(((((.....)))))..)).))).)))...)).)))

Thermodynamic Ensemble Prediction

({..{((((((((..{((((....))))}((((((((((((....))))).))))))).))))...,,((((....}}}),||}}}..}}{{||{,.((({(((...((((((((.((((((..((((((....)))))))))}.,)).)))).)))}.{{(({,({{..,},)}))},|.(((((.....)))))..))})))}}},...)),}})