Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CCDC66_0012300

Sequence Length

460 nt

GC Content

0.3435

GUGAUUUCUCUUUGCCAGUUGAUACAAUACAAAUGGAAUAUAAUGCAUCUAACAUUUCAAAUUCAAGACAUGAUUCUGAUGAAAUCAGUGGUAAAAUGAAUACAUAUAUGAAUUCUACGACUUCUAAGAAGGAUACUGGUGUGCAAACAGAUGACUUAAAUAUAGGAAUAUUCACCAAUGCAGAAUCACAUUGUGGAUCAUUAAUGGAGAGGGACAUCACAAAUUGUUCAUCUCCUGAGAUUUCGGCAGAACUUAUUGGACAGUUUAGCACCAAGAAAAACAAGCAAGAACUAACUCAGGAUAAAGGAGCCAGCUUAGAAAAAGAAAACAAUCGGUGUAAUGACCAGUGUAAUCAGUUCACAAGAAUAGAGAAACAAACAAAACACAUGAAGAAAUAUCCUAAAAGGCCUGAUUGGAAUAUAAAUAAGCCACCUAAAAGGUAUAUUCCAGCAUCAGAAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-72.90 kcal/mol

Ensemble Metrics

Free Energy: -84.75

Frequency: 0.0000

Diversity: 122.37

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((.(((((((.(((.(((((....(((((.((..((....(((((.....((((((...(((.((......))))))))))).(((.(((.(((..(((....)))..))).))).)))(((.....)))...(((((.........((..((.......))..))...))))))))))..))..)))))))....))))))))))))))).))))).....((((...(((((((..(((.((........((((...........)))).........))..)))....))))))).....))))..((((...............(((((((..((.....(((..((.((((....)))).))...)))..))..)))).)))..............))))(((((((((((((......(((........)))))))))))..)))))....

Thermodynamic Ensemble Prediction

(((((.(((((((.(((.{((((....((({{{((,,,,....(((({.....{{{(({...{{,.{{..,,,,||||}}}}}}}.{((.(((.{{{,.(({....,})..))),))).))}{({....,}},...(((((......,..{{,.{{,.....},},..,,,,))))}}}}))..}),.))))))).,,.)})}})))))))))).)))))....{{(((.,,(((((((..(((.((.,......((((...||...}}.)))).........))..))}....))))))).....}}}}...|||.......,.......|,(((,,....})).,{{{..({.((((....)))).))...}},......,,,,.,,,........{||...})).(((((((((((((......,{{.,,.....)))))))))))..}))))....