Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CCDC66_0012900

Sequence Length

538 nt

GC Content

0.3494

UUGAUACAAUACAAAUGGAAUAUAAUGCAUCUAACAUUUCAAAUUCAAGACAUGAUUCUGAUGAAAUCAGUGGUAAAAUGAAUACAUAUAUGAAUUCUACGACUUCUAAGAAGGAUACUGGUGUGCAAACAGAUGACUUAAAUAUAGGAAUAUUCACCAAUGCAGAAUCACAUUGUGGAUCAUUAAUGGAGAGGGACAUCACAAAUUGUUCAUCUCCUGAGAUUUCGGCAGAACUUAUUGGACAGUUUAGCACCAAGAAAAACAAGCAAGAACUAACUCAGGAUAAAGGAGCCAGCUUAGAAAAAGAAAACAAUCGGUGUAAUGACCAGUGUAAUCAGUUCACAAGAAUAGAGAAACAAACAAAACACAUGAAGAAAUAUCCUAAAAGGCCUGAUUGGAAUAUAAAUAAGCCACCUAAAAGAGGCAUUUCACCAGAAAUUUUUCAUUCAUCUCAUCAAGAAACGGAGUCAAAGUUGAGGUGGCAUCUAGUCAAAAAGGAAGAAGAGCCUCUGAAUAUUCAUUCAUUCAGCAAGGAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-84.40 kcal/mol

Ensemble Metrics

Free Energy: -96.92

Frequency: 0.0000

Diversity: 176.15

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.............((((..((((.......))))....))))..(((.((.(((((((((....(((.(((.(((..(((....)))..))).))).))).....(((((((.((((((.......(((((.(((.....(((((((((((((.((((........)))))))))).)))...(((((.(((((........))))).)))))((((..(((....))))))).(((...(((((...((((.....................(((((....((((.....(((.................(((......)))..(((..((.((((....)))).))...))).............))).....))))......)))))))))....)))))...)))))))....))))))))))))))..))))))).......))))).)))).))..)))......(((((..(.(((..((......))))).).)))))(((((....))))).))))(.......)

Thermodynamic Ensemble Prediction

((((...........{{{{......|,,,,....||||{{,..,{,..{{,.{(.((((({{({,,,.(((.(((.{((..(({....}})..))).))).))}{{{,,(,{((,,.((((((,.....,,{{{{.(({.....||||,,,((((({{((((........)))))))))).,}}...(((((.(((((........))))).))))),{{{.,{{|.{{.}},||,,{{{{...||||.}|.}}},.........,,..,,.,,..,|||{{....{|||.,,..|||,,,....,,......,,(((,.....})).{{{{..((.((((....)))).)}...,,........,,,.,,||,...,.}}}}....{{|||||||||........,..|||,|||....{|||}|||||}}},),,))}))))..,,.,,||}}}..}},.}},.))}....})}))))}||.|||..||......}..,,,}.)))}||{{||..,.,})}),))))(.......)