Sequence Details

BLAST PRIMER
Symbol
hsa_CD44_0000300
Sequence Length
334 nt
GC Content
0.6257
CUCAUUGCCCAGCGGACCCCAGCCUCUGCCAGGUUCGGUCCGCCAUCCUCGUCCCGUCCUCCGCCGGCCCCUGCCCCGCGCCCAGGGAUCCUCCAGCUCCUUUCGCCCGCGCCCUCCGUUCGCUCCGGACACCAUGGACAAGUUUUGGUGGCACGCAGCCUGGGGACUCUGCCUCGUGCCGCUGAGCCUGGCGCAGAUCGGUAUGGGUUCAUAGAAGGGCACGUGGUGAUUCCCCGGAUCCACCCCAACUCCAUCUGUGCAGCAAACAACACAGGGGUGUACAUCCUCACAUCCAACACCUCCCAGUAUGACACAUAUUGCUUCAAUGCUUCAG

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-101.00 kcal/mol
Ensemble Metrics
Free Energy: -106.74
Frequency: 0.0001
Diversity: 105.85
Structure Visualization
Structure Prediction
MFE Structure Prediction
..(((((....(((((((..(((((.....))))).))))))).......(((((......(((.(((....)))..)))....)))))..((((..(((....((..(((.....)))..))...))).....))))..((((..(((((........(((((((.((.(((.((((((..(((((((.((........))..)))))))......)))))).))))).)))))))..)))))..))))....(((((..........)))))((((((........)))))).........(((((((...)))))))...)))))......
Thermodynamic Ensemble Prediction
,.,,,{({...(((((((..(((((.....))))).)))))))....,,,((,(({..{{.((({(((....||,.,|||..{{|||,|{,.{{{{{{,,...,{{,.{{|,..,{{{{,,|,..})))}...,|||}...||,..|||||...,.,},|||||||,||}|{{.||||{{}},|{|||{}||}.,}..}}),,})))}}||..,,.|)))},|.|||||.||,,,))}}}))))..,,,}}}.}|{(({..,.......}}}}|((((((........,,,,,,.,,,,,,,.(((((((...)))))))...,,,}),....,
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