Sequence Details

BLAST PRIMER
Symbol
hsa_CD44_0000400
Sequence Length
311 nt
GC Content
0.5113
AAGAGGGCCCUGGUGGUUUCCCUAUAGUCUCUAGGGAAGUUUAUUUGUAUGUUACCUACCAGUGCCAUCUUCUGCUUUGUCUUUGGGCAUUCUGACUCCUGACUCCUUCCAACCUGUCUCCCCGUUCCUUCUAAAAGGCCCCACUUCCAAAUAUUUGGCACUGUCCUAACCCUUGAGGUUCUCCCAGAGACCCGCAGUCUCCCUCCUGCCCCGUGUUUCCACGGCCCCUUUGCGCAGCAUCAUUUAGAGGAAGUACAAUGAAGUGCCAGUAGCAAUAACUGCCCCGGCCCUCGCUUUCAUGUGCUUGUAAA

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-74.50 kcal/mol
Ensemble Metrics
Free Energy: -80.29
Frequency: 0.0001
Diversity: 79.38
Structure Visualization
Structure Prediction
MFE Structure Prediction
((((.(((.(((((((((((((((.......))))))))................))))))).))).))))((((...(((((((((.............(((............))).....(..((((.....(((...((...((((....))))...)).))).......))))..).)))))))))..))))....((((((((((((((....))))).......).)))).........))))(((((((..((((((((.((((......))))...)))....)))))..))))))).....
Thermodynamic Ensemble Prediction
{(((.(((.(((((((((((((((.......)))))))}..............,,)}))))).))).)))}{(((...(((((((((......{{{....({{............))).....|..{(({....}|||...,{...((({....}))).,.}).,,,,{{{...,,)),,..)))))))))..||||....{{{{||||,(((((....)))))..,,,,,|.}}}}.........))))(((((({.{((((((((.({{(......))))...)))....))}}}}}))))))),....
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