Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0001300

Sequence Length

250 nt

GC Content

0.3280

GUAUGGGUUCAUAGAAGGGCACGUGGUGAUUCCCCGGAUCCACCCCAACUCCAUCUGUGCAGCAAACAACACAGGGGUGUACAUCCUCACAUCCAACACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAUCAAUAAUAAUGAGGAAAGCAUGAUAUGUAUAUUGCUGAGUUGAAAGCACUUAUUGGAAAAUAUUAAAAGGCUAACAUUAAAAGACUAAAGGAAACAGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-31.96 kcal/mol

Ensemble Metrics

Free Energy: -36.03

Frequency: 0.0014

Diversity: 22.44

Structure Visualization

Structure Prediction

MFE Structure Prediction

...((.(((((((((.(((.....((((((((...)))).)))).....))).)))))).)))...((((.(((.((((((((((((((........................................................................))))))..........)))))))).))).))))..(((.(((.(((........)))))))))......................))..

Thermodynamic Ensemble Prediction

,,.,,.(((((((((.(((...{.(((({{((...}))),)))).,...))).)))))).)))...((((.(((.((((((((((((((........................................................................))))))..........)))))))).))).))))..(((.(((.(({........}}}))))))............,,...,....}...