Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0001700

Sequence Length

300 nt

GC Content

0.4933

CUCCACCUGAAGAAGAUUGUACAUCAGUCACAGACCUGCCCAAUGCCUUUGAUGGACCAAUUACCAUAACUAUUGUUAACCGUGAUGGCACCCGCUAUGUCCAGAAAGGAGAAUACAGAACGAAUCCUGAAGACAUCUACCCCAGCAACCCUACUGAUGAUGACGUGAGCAGCGGCUCCUCCAGUGAAAGGAGCAGCACUUCAGGAGGUUACAUCUUUUACACCUUUUCUACUGUACACCCCAUCCCAGACGAAGACAGUCCCUGGAUCACCGACAGCACAGACAGAAUCCCUGCUACCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-53.90 kcal/mol

Ensemble Metrics

Free Energy: -59.92

Frequency: 0.0001

Diversity: 72.26

Structure Visualization

Structure Prediction

MFE Structure Prediction

.......((.(((((((.(((.(((.(((...)))(((.......(((((..(((((....(((..((((....))))...)))(((((....)))))))))).)))))......)))......((((((((.((((.....(((........)))..)))).........((.((((((........)))))).)).))))))))))))))))))))).)).........((((.......((((..(((.......)))...)))).....))))...((.(((.....)))))....

Thermodynamic Ensemble Prediction

.....,{(({((..(((((.....))))}...,..{((,......(((((..(((((..,,{{{..((((....))))...))}|{(((....)))}}))))).}))))......|||......,{|||{{{.((((.....(((........)))..)}}).||}..,..|{.((((((........)))))).)).)))))))|{|{,,.,........,,,,..,,..((((.......((((..(((.......)))...)))).....}}}}...|{,{{{.....}))}}....