Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0002300

Sequence Length

600 nt

GC Content

0.4717

CUAUUGUUAACCGUGAUGGCACCCGCUAUGUCCAGAAAGGAGAAUACAGAACGAAUCCUGAAGACAUCUACCCCAGCAACCCUACUGAUGAUGACGUGAGCAGCGGCUCCUCCAGUGAAAGGAGCAGCACUUCAGGAGGUUACAUCUUUUACACCUUUUCUACUGUACACCCCAUCCCAGACGAAGACAGUCCCUGGAUCACCGACAGCACAGACAGAAUCCCUGCUACCACUUUGAUGAGCACUAGUGCUACAGCAACUGAGACAGCAACCAAGAGGCAAGAAACCUGGGAUUGGUUUUCAUGGUUGUUUCUACCAUCAGAGUCAAAGAAUCAUCUUCACACAACAACACAAAUGGCUGGUACGUCUUCAAAUACCAUCUCAGCAGGCUGGGAGCCAAAUGAAGAAAAUGAAGAUGAAAGAGACAGACACCUCAGUUUUUCUGGAUCAGGCAUUGAUGAUGAUGAAGAUUUUAUCUCCAGCACCAUUUCAACCACACCACGGGCUUUUGACCACACAAAACAGAACCAGGACUGGACCCAGUGGAACCCAAGCCAUUCAAAUCCGGAAGUGCUACUUCAGACAACCACAAGGAUGACUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-133.70 kcal/mol

Ensemble Metrics

Free Energy: -145.62

Frequency: 0.0000

Diversity: 175.36

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((...((((((((((..(((((..((((((...((.(..(((((.......(((((((.((((.....(((........)))..)))).........((.((((((........)))))).)).)))))))((((............))))......)))))..).))......(((.......)))(((((.((......((((..((.....))..))))...(((((((((((((....)))).(((...)))(((.((((((((.((......(((((.......))))))).)))))))))))..))))))))).......(((((((((..........((..(((((((((..........)))))((((((....))))))))))..)).......)))))))))..((..((((.((....))...))))..)).((....((((.((.((.((((...)))).)).)).))))....)).......((........))..........)).))))).))))))..))))).......)))).)))....)))....)).....(((.((.((....)).)).)))

Thermodynamic Ensemble Prediction

.....(({,.(({(((((((..(((((..((((((..,((.{..{{{((...,,.{(((((((.((((.....(((........)))..)))).{{{.....||,((((((........)))))).)).)))))))|(({............}))},}}}..|||}}..,.},......(((.......))}(((((.((......{(({..({.....}}..))))...{(((((((({((,....|}}}.|{|},.}}}{({.{(((((((.({{,..,,({{((......,)}))))}.)))))))}}}}..))))))))|.......(((((((((........,.,,..(({({((({..,,,,,,..}}}},((((((....)))))))))}..))..,....)))))))))..((,.{{((.,.....}}.,.))))..)}.||,.}||||{.|({{{.{{{,.,,)))}.})}}}})}}...,,}}...,,..})}.|||||.}}...,,,,...)).))))).))))))..))))).......}))}},,,...,}}}|||,}}..,,}|{|.,,.{|.,..)).)),)}}