Sequence Details

BLAST PRIMER
Symbol
hsa_CD44_0002900
Sequence Length
331 nt
GC Content
0.5106
AAAGGAGAAUACAGAACGAAUCCUGAAGACAUCUACCCCAGCAACCCUACUGAUGAUGACGUGAGCAGCGGCUCCUCCAGUGAAAGGAGCAGCACUUCAGGAGGUUACAUCUUUUACACCUUUUCUACUGUACACCCCAUCCCAGACGAAGACAGUCCCUGGAUCACCGACAGCACAGACAGAAUCCCUGCUACCAGAGACCAAGACACAUUCCACCCCAGUGGGGGGUCCCAUACCACUCAUGGAUCUGAAUCAGAUGGACACUCACAUGGGAGUCAAGAAGGUGGAGCAAACACAACCUCUGGUCCUAUAAGGACACCCCAAAUUCCAG

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-74.20 kcal/mol
Ensemble Metrics
Free Energy: -79.91
Frequency: 0.0001
Diversity: 84.33
Structure Visualization
Structure Prediction
MFE Structure Prediction
(((((.......(((.....((((((((.((((.....(((........)))..)))).........((.((((((........)))))).)).)))))))).......))).......)))))((.((((.......((((..(((.......)))...)))).....))))...((.(((.....)))))..(((((...........((((((((((.((((((........)).)))))))(((((...))))).(((.(((....))).))).....)))))))..........)))))(((((...)))))............))
Thermodynamic Ensemble Prediction
{{{((,{.....{{{.....((((((((.((((.....(((........)))..)))).,,,.....{{.((((((........)))))).)).)))))))),{||...,,,....,,|}||||{,.(({{.......{(((..(((.......)))..,))}}.....}}||,,.,(,{{{..,,.})))).{(((((...........{(((((((({{(((({{{{,,....||.}}}})))(((((...))))),|||.|||...,))).))}.....))))))}..........)))))|{(({...}))}}.........,}},}
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