Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0003500

Sequence Length

216 nt

GC Content

0.4167

GUACGUCUUCAAAUACCAUCUCAGCAGGCUGGGAGCCAAAUGAAGAAAAUGAAGAUGAAAGAGACAGACACCUCAGUUUUUCUGGAUCAGGCAUUGAUGAUGAUGAAGAUUUUAUCUCCAGCACCAAGCAGAGUAAUUCUCAGAGCUUCUCUACAUCACAUGAAGGCUUGGAAGAAGAUAAAGACCAUCCAACAACUUCUACUCUGACAUCAAGCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-39.20 kcal/mol

Ensemble Metrics

Free Energy: -42.81

Frequency: 0.0029

Diversity: 46.89

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((((.......((((((....))))))......))))))...((..((((..((((.((((.((....))...))))...(((((.((.(((.(((((.(((.....(((...((.....)).(((.....)))))).....))).)))))))).)).)))))..(((((..................))))).))))..))))...))

Thermodynamic Ensemble Prediction

.....((((((.......((((((....))))))......))))))...((..((((..((((.,{{{.....,,|,...})))..{(((((.{(.(((.(((((.(((....,|{{...((.....)).(((.....)))||||...,))).)))))))).)}.)))))}.(((((.....,............))))).))))..))))...))