Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0004100

Sequence Length

369 nt

GC Content

0.4499

CUUUGAUGAGCACUAGUGCUACAGCAACUGAGACAGCAACCAAGAGGCAAGAAACCUGGGAUUGGUUUUCAUGGUUGUUUCUACCAUCAGAGUCAAAGAAUCAUCUUCACACAACAACACAAAUGGCUGGUACGUCUUCAAAUACCAUCUCAGCAGGCUGGGAGCCAAAUGAAGAAAAUGAAGAUGAAAGAGACAGACACCUCAGUUUUUCUGGAUCAGGCAUUGAUGAUGAUGAAGAUUUUAUCUCCAGCACCAUUUCAACCACACCACGGGCUUUUGACCACACAAAACAGAACCAGGACUGGACCCAGUGGAACCCAAGCCAUUCAAAUCCGGAAGUGCUACUUCAGACAACCACAAGGAUGACUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-80.40 kcal/mol

Ensemble Metrics

Free Energy: -86.59

Frequency: 0.0000

Diversity: 123.41

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((((((....)))).(((...)))(((.((((((((.((......(((((.......))))))).)))))))))))..))))))))........(((((((((..........((..(((((((((..........)))))((((((....))))))))))..)).......)))))))))..(((........)))(((.(((((((((..((....((((.((.((.((((...)))).)).)).))))....))........(((((....((((......(((........)))......)))).....)))))......))))))))).)))....(((.((.((....)).)).)))

Thermodynamic Ensemble Prediction

{((((({(((({,{.,|||}.,,|,..))}{({.{(((((({.{{{,,.,,({{((......,)}}}}}}.}))))))}}}}..|||||}}|({......(((((((((..........,...(((((((({..,,,,{,..}}}},((((((....)))))))))}..)),.,....)))))))))..(({.,,{,...,}},||.{{||||{{|,.{{,.|||||{.{(|{{.{{{,.,,)))}.}),))}))},..,,}},..||,,||{,|||||.||,,......,,{........||||,....||||.....,,})),},...,)))))}))}))).,.}|||,({.{(....)).)).,))