Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0005100

Sequence Length

175 nt

GC Content

0.4571

UGGGUUGCUUGGCGUCCAGCUCAGCCACUAAUGCAAGUCACCACAACAGGUACGUCUUCAAAUACCAUCUCAGCAGGCUGGGAGCCAAAUGAAGAAAAUGAAGAUGAAAGAGACAGACACCUCAGUUUUUCUGGAUCAGGCAUUGAUGAUGAUGAAGAUUUUAUCUCCAGCACCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-34.50 kcal/mol

Ensemble Metrics

Free Energy: -38.40

Frequency: 0.0018

Diversity: 35.92

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.(((.(((((..((((((...(((.(((......))).(((......))).((((((((.......(((((...((((...))))...)).)))...))))))))...(((........))).)))...)))))))))))))).)((.((.((.((((...)))).)).)).))

Thermodynamic Ensemble Prediction

(.((,{(((((,.{(((((...,{{.,,,...},.,},.(((......))).((((((((.......(((((...((((...))))...))},))...))))))))...(((,,.{,...,)).)))},,)))))))))))))).)((.((.((.((({...)))).)).)).))