Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0005300

Sequence Length

409 nt

GC Content

0.4792

UGGGUUGCUUGGCGUCCAGCUCAGCCACUAAUGCAAGUCACCACAACAGGUACGUCUUCAAAUACCAUCUCAGCAGGCUGGGAGCCAAAUGAAGAAAAUGAAGAUGAAAGAGACAGACACCUCAGUUUUUCUGGAUCAGGCAUUGAUGAUGAUGAAGAUUUUAUCUCCAGCACCACAGCCUCAGCUCAUACCAGCCAUCCAAUGCAAGGAAGGACAACACCAAGCCCAGAGGACAGUUCCUGGACUGAUUUCUUCAACCCAAUCUCACACCCCAUGGGACGAGGUCAUCAAGCAGGAAGAAGGAUGGAUAUGGACUCCAGUCAUAGUAUAACGCUUCAGCCUACUGCAAAUCCAAACACAGGUUUGGUGGAAGAUUUGGACAGGACAGGACCUCUUUCAAUGACAACGC

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-94.40 kcal/mol

Ensemble Metrics

Free Energy: -101.93

Frequency: 0.0000

Diversity: 144.40

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(((.(((.(((.....))).))).)))...((..((((((......)))...((((((.......((((((....))))))......)))))).........((((((((.....((..((.((((((((...((..((.((((((((..((((((..(((..(((((........((((.(((........((.(((.......))).)).........)))...)))).......))))).)))..)))))).......(((...(((...)))..)))))))))))))..)))))))))).))..))...(((.(((...((.(((..((((.(((..(((............)))....))).))))..))).))..))).))).))))))))..)))...))

Thermodynamic Ensemble Prediction

{{(((,(({.({{...,,))),)||.}}|...{{..((,(((......))).{(((((((.......(((((,..(((|,,,)}}}...))},)}...}}}}}}}|,.,(({.,,{{..,.,..||||,||||..||.,((.{(({(({{{.((((((..{{|,,{{{{(....,..|((((.(((.......,((.(((.......))).)).........)))...)))).,.,|,,|||}}.|||,.}||||}.{,,,..{{{...{{,..,)))..))))}}))))}})|||,,(((({,,,,,{{({{{{....})),,},,.,..,.)))).,)}}.}}},....{{{{{{...,))))))}||,,|}}}}|},,,}},},},.}))))))),..},}...))