Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0005400

Sequence Length

265 nt

GC Content

0.4415

UGGGUUGCUUGGCGUCCAGCUCAGCCACUAAUGCAAGUCACCACAACAGGUACGUCUUCAAAUACCAUCUCAGCAGGCUGGGAGCCAAAUGAAGAAAAUGAAGAUGAAAGAGACAGACACCUCAGUUUUUCUGGAUCAGGCAUUGAUGAUGAUGAAGAUUUUAUCUCCAGCACCAAGCAGAGUAAUUCUCAGAGCUUCUCUACAUCACAUGAAGGCUUGGAAGAAGAUAAAGACCAUCCAACAACUUCUACUCUGACAUCAAGCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-56.60 kcal/mol

Ensemble Metrics

Free Energy: -60.58

Frequency: 0.0016

Diversity: 50.79

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.(((.(((.(((.....))).))).))).)(((..((.(((......))))).((((((.......((((((....))))))......)))))).......((((..((((.((((.((....))...))))...(((((.((.(((.(((((.(((.....(((...((.....)).(((.....)))))).....))).)))))))).)).)))))..(((((..................))))).))))..))))..)))

Thermodynamic Ensemble Prediction

(.(((.(((.(((.....))).))).))).)(((..((.(((......)))}}.((((((.......((((((....))))))......)))))).......((((..((((.,{{{.....,,|,...})))..{(((((.{(.(((.(((((.(((....,|{{...({.....)}.(((.....)))||||...,))).)))))))).)}.)))))}.(((((.....,............))))).))))..))))..)))