Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0006000

Sequence Length

258 nt

GC Content

0.4767

GUACGUCUUCAAAUACCAUCUCAGCAGGCUGGGAGCCAAAUGAAGAAAAUGAAGAUGAAAGAGACAGACACCUCAGUUUUUCUGGAUCAGGCAUUGAUGAUGAUGAAGAUUUUAUCUCCAGCACCACAGCCUCAGCUCAUACCAGCCAUCCAAUGCAAGGAAGGACAACACCAAGCCCAGAGGACAGUUCCUGGACUGAUUUCUUCAACCCAAUCUCACACCCCAUGGGACGAGGUCAUCAAGCAGGAAGAAGGAUGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-56.70 kcal/mol

Ensemble Metrics

Free Energy: -60.96

Frequency: 0.0010

Diversity: 72.97

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.((((((((.......(((((...((((...))))...)).)))...))))))))............))((..((((((((...((..((.((((((((..((((((..(((..(((((........((((.(((........((.(((.......))).)).........)))...)))).......))))).)))..)))))).......(((...(((...)))..)))))))))))))..))))))))))))

Thermodynamic Ensemble Prediction

((.{(((((({.....,.(((((...((((...))))...)),.},...))))))))...,,,..,,,.}}{{,.{(((((((...{{..((.(((((({{,.((((((..{{|,,{{{((....,..|((((.(((.......,((.(((.......))).)).........}))...))))...,|,,|)))}.|||..}||||}.{,,,..{{{...{{,..,)))..))))}}))))})),,))))))))))))