Sequence Details

BLAST PRIMER
Symbol
hsa_CD44_0006600
Sequence Length
465 nt
GC Content
0.4796
CAGGCUGGGAGCCAAAUGAAGAAAAUGAAGAUGAAAGAGACAGACACCUCAGUUUUUCUGGAUCAGGCAUUGAUGAUGAUGAAGAUUUUAUCUCCAGCACCAUUUCAACCACACCACGGGCUUUUGACCACACAAAACAGAACCAGGACUGGACCCAGUGGAACCCAAGCCAUUCAAAUCCGGAAGUGCUACUUCAGACAACCACAAGGAUGACUGCAGAUGUAGACAGAAAUGGCACCACUGCUUAUGAAGGAAACUGGAACCCAGAAGCACACCCUCCCCUCAUUCACCAUGAGCAUCAUGAGGAAGAAGAGACCCCACAUUCUACAAGCACAAUCCAGGCAACUCCUAGUAGUACAACGGAAGAAACAGCUACCCAGAAGGAACAGUGGUUUGGCAACAGAUGGCAUGAGGGAUAUCGCCAAACACCCAAAGAAGACUCCCAUUCGACAACAGGGACAGCUG

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-93.40 kcal/mol
Ensemble Metrics
Free Energy: -103.48
Frequency: 0.0000
Diversity: 125.78
Structure Visualization
Structure Prediction
MFE Structure Prediction
..((.((((((.........................((..((((.((....))...))))..)).(((......(((((........)))))(((..((((((((...(((.(((((...((((((.((((......(((........)))......))))......(((..(((...((((...((((((((........((....((((...(((...((((((.......((((....))))...........((((...)))).........(((...((.(((..(((((...)))))..))))).))).........)))))).)))..)))).))........))))))))..)))).)))...)))...)))))).....))))).)))....))))))..))..)))....)))................)))))).)).....(((......)))
Thermodynamic Ensemble Prediction
..(((((((,{((...,,.,,,,..{,..{,{{...{{,..,,,,,.,}}.}}}}}))},.,}|,||}.,|{,|{{{({{{.,,,,.}))))|,|}.|,{|||||...{{{.,(({{{({{(({{(.{{,,......{{|..,..,..})),...,.))))..}}}}}))).{{{...((((...((((((((...,....{{....((((...(((...((((((......,(({,....|}||,.....,,...((((...))))...,.....{{{..,((.(((..(((((...)))))..)))},.))).........)))))).)))..)))).})........))))))))..)))).}}}.{{{{{.,((....}}....||}||{|||....}}))|)|.,,.{||,.,}},,},....,,,......,.,||||,.,,.....,.}}}..}))))
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