Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0006800

Sequence Length

360 nt

GC Content

0.4611

GCUGGGAGCCAAAUGAAGAAAAUGAAGAUGAAAGAGACAGACACCUCAGUUUUUCUGGAUCAGGCAUUGAUGAUGAUGAAGAUUUUAUCUCCAGCACCAUUUCAACCACACCACGGGCUUUUGACCACACAAAACAGAACCAGGACUGGACCCAGUGGAACCCAAGCCAUUCAAAUCCGGAAGUGCUACUUCAGACAACCACAAGGAUGACUGUCACAGUGUAUUUAACCAUCAUCACAGCAGAUGUAGACAGAAAUGGCACCACUGCUUAUGAAGGAAACUGGAACCCAGAAGCACACCCUCCCCUCAUUCACCAUGAGCAUCAUGAGGAAGAAGAGACCCCACAUUCUACAAGCACAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-67.70 kcal/mol

Ensemble Metrics

Free Energy: -73.74

Frequency: 0.0001

Diversity: 99.20

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((((..............(((((......(((........)))(((.(((((((((..((....((((.((.((.((((...)))).)).)).))))....))........(((((....((((......(((........)))......)))).....)))))......))))))))).))).)))))((((..((......))..))))...((((......((.((((...(((((.((....((....))....))))))).)))).))...((((...))))..))))...)))))((..(((..(((((...)))))..)))..))(((........)))...)))....

Thermodynamic Ensemble Prediction

((((((((..............,..........(((........})),{{.{{(((((((..((,.,{({{(,((,((.{{{,.,,)))}.)}.}}.}}}}....,,.......,(((((,,{.{{{{......{{{........})),.....)))).....}})))......,)))))))||}|}.|}}||{,((.{(....}}.)).}))}}..,||||......((.((((...(((((.{(,.,.((....)).},,}}))))).)))).))...((((...)))).,}})}...)))))((,.(((..(((((...)))))..)))..})||,........}}}...)))....