Sequence Details

BLAST PRIMER
Symbol
hsa_CD44_0007000
Sequence Length
356 nt
GC Content
0.4579
CCAUCUAUACAACCUGGUAUAGAUGAUUCAUUGCAUAGCCUACAGAAGCAAGACUAUGUGCGGGACAAGUGGCGAAGGCUCAAGAAAUAACAUUUUUCUAAUUGCUUCAAUCAUCGUUAUCACAGUUUCAACCACACCACGGGCUUUUGACCACACAAAACAGAACCAGGACUGGACCCAGUGGAACCCAAGCCAUUCAAAUCCGGAAGUGCUACUUCAGACAACCACAAGGAUGACUGAUGUAGACAGAAAUGGCACCACUGCUUAUGAAGGAAACUGGAACCCAGAAGCACACCCUCCCCUCAUUCACCAUGAGCAUCAUGAGGAAGAAGAGACCCCACAUUCUACAAGCACAA

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-74.80 kcal/mol
Ensemble Metrics
Free Energy: -81.55
Frequency: 0.0000
Diversity: 82.86
Structure Visualization
Structure Prediction
MFE Structure Prediction
.(((((((((......))))))))).((...(((...((........)).(((..(((((.(((....(((((((((((((.(((((.......)))))(((((..................))))).............))))))))).)))).................(((((...(((((........)))))....)))))..((.((((.((((.((.((....)).)).)))).))))))......((((....))))...........((((...)))).........(((...((.(((..(((((...)))))..))))).))).)))))))))))....))).))
Thermodynamic Ensemble Prediction
.(((((((((......))))))))).,{...(((...{{........)),|{{..{((((.(((....((((((((((({{.(((((.......))))).,,{(,,,|.......|,.....|||{{,,...........}|}}|||||.}}}}......,,,..,,.,,.||}|...{(((((.......{||{{{,....,,,,..,({((((.((((.((.((....)).)).)))).)))).)}..,})))}.}}}}))||......,},,,||||...}}}),,}}.....,||..{({.(((..(((((...)))))..))),,.)}).)))))))}})}....))).},
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