Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0007800

Sequence Length

375 nt

GC Content

0.5120

UUUCAACCACACCACGGGCUUUUGACCACACAAAACAGAACCAGGACUGGACCCAGUGGAACCCAAGCCAUUCAAAUCCGGAAGUGCUACUUCAGACAACCACAAGGAUGACUGUCCAGGCAACUCCUAGUAGUACAACGGAAGAAACAGCUACCCAGAAGGAACAGUGGUUUGGCAACAGAUGGCAUGAGGGAUAUCGCCAAACACCCAAAGAAGACUCCCAUUCGACAACAGGGACAGCUGCAGCCUCAGCUCAUACCAGCCAUCCAAUGCAAGGAAGGACAACACCAAGCCCAGAGGACAGUUCCUGGACUGAUUUCUUCAACCCAAUCUCACACCCCAUGGGACGAGGUCAUCAAGCAGGAAGAAGGAUGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-86.10 kcal/mol

Ensemble Metrics

Free Energy: -92.29

Frequency: 0.0000

Diversity: 99.20

Structure Visualization

Structure Prediction

MFE Structure Prediction

(....)(((..((..((((((....((((......(((........)))......))))....(((((((((....((((...((((((((........((....((((....)))).))........))))))))..))))............((....))...)))))))))(((...((((((.((.(((.............))).........((((...........)))).(((((......))))).....))))))))...)))......((......)))))))).........((((((...((((..((((..((((.............))))..))))..))))..))))))...)).)))

Thermodynamic Ensemble Prediction

(....}(({..({.{{{((((.{{,((........(((..{{,,,,|||..,||.}|||...,{{(((((((,...((((...((((((((.,,{.,,.((....||{|,.,,)}},,||.....}},))))))))..)))).,.....,||.,((....))...}))))))))|{,...((((((.{{.(((...,,........}}}.........{(((...........)))}.{((((......))))}.....,.)))))},..,}}..||..||......}}.})))),,.)).},,|{||||,.,|{{{..((((..((((.............))))..)))),.)}}),,)}})},...)}.)))