Sequence Details

BLAST PRIMER
Symbol
hsa_CD44_0008300
Sequence Length
222 nt
GC Content
0.4685
CAGAUGUAGACAGAAAUGGCACCACUGCUUAUGAAGGAAACUGGAACCCAGAAGCACACCCUCCCCUCAUUCACCAUGAGCAUCAUGAGGAAGAAGAGACCCCACAUUCUACAAGCACAAAUAUGGACUCCAGUCAUAGUAUAACGCUUCAGCCUACUGCAAAUCCAAACACAGGUUUGGUGGAAGAUUUGGACAGGACAGGACCUCUUUCAAUGACAACGC

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-34.70 kcal/mol
Ensemble Metrics
Free Energy: -40.19
Frequency: 0.0001
Diversity: 70.12
Structure Visualization
Structure Prediction
MFE Structure Prediction
((..((....))....))((.....((.((((((((((..((((...)))).........(((...((.(((..(((((...)))))..))))).)))...(((.(((...........))).)))..(((.(((...((.(((..((((.(((..(((............)))....))).))))..))).))..))).)))..)))))).))))))..))
Thermodynamic Ensemble Prediction
((..({....,}....))((.....((,(({(({{(({..((((...)))}.........{{{..,((.(((..(((((...)))))..)))},.)}}...,,...||||..,,{{.......|||,.,}|,|||.,,{|.....}||,,.{{...}}},....{{{{{{....))))))||||||{.,}|,.,.,|...},.,.))))))},}}}},..))
Back