Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0008600

Sequence Length

480 nt

GC Content

0.4938

AUGUAGACAGAAAUGGCACCACUGCUUAUGAAGGAAACUGGAACCCAGAAGCACACCCUCCCCUCAUUCACCAUGAGCAUCAUGAGGAAGAAGAGACCCCACAUUCUACAAGCACAAUCCAGGCAACUCCUAGUAGUACAACGGAAGAAACAGCUACCCAGAAGGAACAGUGGUUUGGCAACAGAUGGCAUGAGGGAUAUCGCCAAACACCCAAAGAAGACUCCCAUUCGACAACAGGGACAGCUGCAGCCUCAGCUCAUACCAGCCAUCCAAUGCAAGGAAGGACAACACCAAGCCCAGAGGACAGUUCCUGGACUGAUUUCUUCAACCCAAUCUCACACCCCAUGGGACGAGGUCAUCAAGCAGGAAGAAGGAUGGAUAUGGACUCCAGUCAUAGUAUAACGCUUCAGCCUACUGCAAAUCCAAACACAGGUUUGGUGGAAGAUUUGGACAGGACAGGACCUCUUUCAAUGACAACGC

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-101.10 kcal/mol

Ensemble Metrics

Free Energy: -110.12

Frequency: 0.0000

Diversity: 115.53

Structure Visualization

Structure Prediction

MFE Structure Prediction

(.((((.(.((...(((.....((((.((((......(((((..(((....(.((.(((.(((((((((..(((((...)))))..))((((...........))))....((.(......)))...((((.(((((...............))))).....))))...((.(((((....))))).))))))))).........................((((...........))))..((((...((((.(((........((.(((.......))).)).........)))...)))).))))(((((...((((..((((..((((.............))))..))))..))))..)))))...))).)))...)))..)))))))))))))....))))).).)))))((....((((((....))))))(((((((...(..(......)..).)))))))........))

Thermodynamic Ensemble Prediction

,{(((({,.,....(((,....||||,,{{.......((((,..|||}...,....,{{{..{((.(((..(((((...)))))..)))},,)}}.........)))}}}.((....{(((((.(((((((.(((((...............)))))((....))....{,{((((((,....{{((({.{{,{{{......,......,,,.........{(((...........)))}.{((((......))))}.....,.}||,||{..,,...}}}.}}.,....})})))},.,))),.,))))))))}.((((..((((..((((.............))))..))))..)))).{|{||..{{{||.||..{,|||,,,,,,)))}}},},,...,))))..})),))||....((((((....))))))(((((((,,,(..{....,,),.}.)))))))........))