Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CD44_0008900

Sequence Length

200 nt

GC Content

0.4500

GAAUGAUGUCACAGGUGGAAGAAGAGACCCAAAUCAUUCUGAAGGCUCAACUACUUUACUGGAAGGUUAUACCUCUCAUUACCCACACACGAAGGAAAGCAGGACCUUCAUCCCAGUGACCUCAGCUAAGACUGGGUCCUUUGGAGUUACUGCAGUUACUGUUGGAGAUUCCAACUCUAAUGUCAAUCGUUCCUUAUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-45.70 kcal/mol

Ensemble Metrics

Free Energy: -50.23

Frequency: 0.0006

Diversity: 66.51

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((...(((..((((.((((.((((((.......((((.((..........(((((((.((((...))))................(((((.........)))))...))))))))))))).......))))))))))..(((.((....)).)))((((((...)))))))))).)))..)))))))((....))

Thermodynamic Ensemble Prediction

(((((((...{{{.{(((,.(({({(({{{,.,{{.{,(((((({........,,||{{{|||||||,...,|}}}}.}}..}},}....{{{{|........,)))))...||||}||||}|||......}))))))}}}}||{{{,.|,||,{|,|,,((((({...)))))),,)),))},.)))))))((....))