Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CDK13_0001300

Sequence Length

250 nt

GC Content

0.3080

AAUUAGAAUGUUUCUAAACACUUCCCUCCACACUGUAUUAAUGUCAACUAAGAACGGAAAUUUUCAGUGUCCAGGCACGGUGGCUCAUGCCUGUAAUCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAUUAAAAUUCUCCGGCAGCUUACCCAUCAGAGUAUUAUCAAUAUGAAGGAAAUAGUGACUGAUAAAGAAGAUGCUUUGGAUUUCAAGAAGGACAAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-27.20 kcal/mol

Ensemble Metrics

Free Energy: -33.10

Frequency: 0.0001

Diversity: 37.22

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((((...))))))...(((...(((((((((......((((......).)))........)))))).((((((.((....)).))))))................................................................((((((...((((.(((....((((((.((((.((........)).)))).)..)))))....))).))))..))))))......)))..)))

Thermodynamic Ensemble Prediction

..(((((,...})))))...(((,{.({,((((((.,,,..((((......),,))...,,...)))))).((((((.({....,).)))))).........................................................,,......,,,{{{,,((((.(((....(((((,.((((.((........}}.}))).)..)))))....))).))))..)))}}}...},,))}..,))