Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CDK13_0010800

Sequence Length

237 nt

GC Content

0.4177

AGGGCAGAUAAAACUUGCAGACUUUGGACUUGCUCGAUUGUAUAGCUCAGAAGAAAGUCGGCCGUAUACUAACAAGGUAAUUACUUUAUGGUACCGUCCACCUGAACUGCUACUGGGAGAAGAACGAUACACACCAGCCAUUGAUGUAUGGAGCUGUGGCUGUAUCCUUGGCGAACUCUUCACUAAAAAACCUAUAUUUCAAGCAAAUCAGGAACUUGCACAACUAGAAUUAAUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-37.50 kcal/mol

Ensemble Metrics

Free Energy: -43.02

Frequency: 0.0001

Diversity: 59.29

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(((((............((((((...((.(((.........)))..))...))))))((.((..(((((..(((((....))))).))))).)).)).(((((..((((..(((((..((...((((((..((((((((......)))..)))).)..)))))).((((.(((...))).)))).....))...)))))))))..)))))...)))).)..((..........))

Thermodynamic Ensemble Prediction

..,((((.......,,||.({{(((.,,{(,(({.....,,..}}},,}}...}})))){(,{(..(((({..((({{....})))}.))))).}).)).(((((..((((..(((((..,{...((((((..((((((((......)))}.}))).)..)))))).((((.(({...})).)))).....}}...))))}))))..)))))...}}}}.,..,,..........,}