Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CDK13_0012700

Sequence Length

369 nt

GC Content

0.5149

UCGGCCGUAUACUAACAAGGUAAUUACUUUAUGGUACCGUCCACCUGAACUGCUACUGGGAGAAGAACGAUACACACCAGCCAUUGAUGUAUGGAGCUGUGGGACAAGAUGACCUCAUCCAGCAUCAAGAUAUGAGGAUCUUGGAGCUAACGCCAGAACCAGACCGGCCUCGAAUUCUGCCUCCUGACCAACGACCUCCCGAGCCUCCUGAACCACCACCAGUCACUGAGGAAGAUCUAGAUUAUCGGACAGAAAACCAGCAUGUACCCACCACCAGUUCUUCAUUAACUGACCCUCAUGCCGGAGUGAAGGCAGCCCUGUUACAGCUGCUUGCUCAGCAUCAGCCCCAGGAUGACCCCAAAAGAGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-76.20 kcal/mol

Ensemble Metrics

Free Energy: -84.17

Frequency: 0.0000

Diversity: 111.10

Structure Visualization

Structure Prediction

MFE Structure Prediction

(..(((............))).)((.((((.(((....(((..((((....(((.((((.................)))).((((((((...((((((((((((((.((((....)))).(((.(((((((......))))))).))).....(((...((((.((....))...))))....)))............((((...((..((.(..((..(((...))).))..).))..))...))))..............))).)))))....)))))).)))))).))......((((..((((..(((((((.........))))))))))).)))).)))..))))..))).)))..)))).))

Thermodynamic Ensemble Prediction

(.,(((,..,,,,....,|}}.,,,.||||.|||,,.||{{|.,{{{..,,,{,.{((({.{,,,,,,.,,,,,,,,}},.,,{||,||,}}{({{{{((((((({.((((....)))).(((.(((((((......))))))).)))...({(.{.....,..,}}}.,,,..,||||,,{,,|{,,....,...,,{,|{,..{{,{{,........,,},,,,,}}))..}.}}..},...,,)).}}},.........))).))))}...}})))))})}}},,{||...{{.((((..((((..{((((((.........))))))))))).)))),))...)))),}),,,)))..})}).})