Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CDK13_0014300

Sequence Length

473 nt

GC Content

0.5137

UCUCCCUUUAUGGCAAGAUUGUCAUGAGUUAUGGAGUAAAAAGCGAAGAAGACAGAAGCAGAUGGGCAUGACUGAUGAUGUUUCCACAAUUAAAGCCCCCAGGAAGGACUUGUCUCUGGGCUUGGAUGACAGCAGAACCAACACACCCCAGGGUGUGCUGCCAUCUUCACAGCUGAAAUCUCAGGGCAGCUCAAAUGUGGCACCUGGACAAGAUGACCUCAUCCAGCAUCAAGAUAUGAGGAUCUUGGAGCUAACGCCAGAACCAGACCGGCCUCGAAUUCUGCCUCCUGACCAACGACCUCCCGAGCCUCCUGAACCACCACCAGUCACUGAGGAAGAUCUAGAUUAUCGGACAGAAAACCAGCAUGUACCCACCACCAGUUCUUCAUUAACUGACCCUCAUGCCGGAGUGAAGGCAGCCCUGUUACAGCUGCUUGCUCAGCAUCAGCCCCAGGAUGACCCCAAAAGAGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-115.00 kcal/mol

Ensemble Metrics

Free Energy: -124.12

Frequency: 0.0000

Diversity: 158.06

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.(((....(((..(((((((((.(((((((.........((.............)).......))))))).))))........)))))...)))...)))..)))(((.(((.(((((((((..((..((((......((((((....))))))))))..))...(((((((.....(((((((((......((.(((..((((....((((....)))).(((.(((((((......))))))).)))..........))))....))).))....))))..)))))...........((((...((..((.(..((..(((...))).))..).))..))...)))).........)))).))).........(((((.......)))))...((.((((..((((..(((((((.........))))))))))).)))).))..))))).....))))..))).)))

Thermodynamic Ensemble Prediction

(((.(((,...(((..{({((((((.(((((((..,,.....((.............))...,...))))))).)))}.......,))}))...)))...}))..)))(((.(((,(((({{{((({(,,,((((......((((((....)))))))))},,}}|,,.,{{{{{......((((((.((,....,}|{||.,||||....((({....)))).{((.(((((((......))))))).))}...|||||...,||..,||},,|,...||}}|,,,,||,.....,.....,}||},,|{|{{.........,,||,,.|||}|{{|{,|,.|....,.||{{{,........,.))).}}......{||{|,,}}...})}))...|,.{|||,,{{{{,.,|||{||,,,,...,,))))})})))}.)))},}),.,}})),.,..,,},..})).)))