Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CDYL_0003500

Sequence Length

443 nt

GC Content

0.4740

AUAUGAUAUUGUUAUUGGUGUCUAACUCCCCUGCAGUCAGAGAACAUAACCUGUUGAAAGGAUUGUUGACAAAAGGAAAAAUAAAAAAGGGAAGACAGAGUAUUUGGUUCGGUGGAAAGGCUAUGACAGCGAGGACGACACUUGGGAGCCGGAACAGCACCUCGUGAACUGUGAGGAAUACAUCCACGACUUCAACAGACGCCACACGGAGAAGCAGAAGGAGAGCACAUUGACCAGAACAAACAGGACCUCUCCCAACAAUGCUAGGAAACAAAUCUCCAGAUCCACCAACAGCAACUUUUCUAAGACCUCUCCUAAGGCACUCGUGAUUGGGAAAGACCACGAAUCCAAAAACAGCCAGCUGUUUGCUGCCAGCCAGAAGUUCAGGAAGAACACAGCUCCAUCUCUCUCCAGCCGGAAGAACAUGGACCUAGCGAAGUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-91.00 kcal/mol

Ensemble Metrics

Free Energy: -100.74

Frequency: 0.0000

Diversity: 130.31

Structure Visualization

Structure Prediction

MFE Structure Prediction

...((((.((((((..((((((.(((...(((.(((.(((..........))))))..)))...))))))...((((..........(((..(((.(((((.....(((.((((((..(((.......((((((.......((((...)))).......))))))...((((((((.............)))).))))..)))....(((((((((...((((((....(((...........)))...))))))......))))..........)))))...)))))))))....))))))))....))).))))..((((.(((((.((......)).)))))......((((((....))))))..))))(((.....((((.....))))...)))((((.(((.(((....))))))..))))))))))))).)))).

Thermodynamic Ensemble Prediction

...((((.((((((..(((((((...((((((...((({...,{((...(((......))).})))))))...}}}............})}}})}}|,,((.{((((((,(((((,..,{({......(((((,......{(((({{{},{{....,,.}|||||{..{(((({((.......,,....}))),,)))..}}}....(((((((((...((((((..,.(((...........)}),..))))))......)))).,,,......}})))...,,,,,,..,.....|||.,,,.,,.}},})))}}})},.}}||},.||,},.....})))))}.}}}}|.||.{.,,{||||,,}||},,,||,,,..((((.....)))).,,}}|((((.{{(,(((....))))))..)))))}))))))).)))).