Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CDYL_0008200

Sequence Length

339 nt

GC Content

0.3982

GUUUUCUCCUCGGCCCAGGCCCUUGUGUAGCAAAAAAGUGGAAUAUGAACUGAAAUCUGGGGUCUCCCUUUGACAGGAAAUUGCCAUCUUGCCAAUGUUUUUCAGAUACACACUUGACCCAAACGGUGCCUUUUCCGGCUUCAUUGGAGCUUGUGAACUUGUUUGCAGAAGUAAUUGCUUUUAAAAACUGGAUUAUCGUAACUUUGUCCUUUCAUGGAUUCAAACAUAUAAUUCAUCAUCAUUCCGGCCAGGUCUAAAACAUGGCUGUGAAUAAAUUUUUUCUCGAGUCAACCAAAAAAUGAACGACUUCGAUACUGAGCAGUUGAAAGAAAACUUACA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-69.20 kcal/mol

Ensemble Metrics

Free Energy: -76.06

Frequency: 0.0000

Diversity: 69.18

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((....(((....)))(((.((((((((..(((((...(((...((((((...(((....))).(((.(((((........))))).)))....)))))))))..))))).(((.....)))(((......)))(((((........))))).))).))))).)))(((((((((........((((((((.........((((......))))........)))))))).....((((((((((.((.....)).)))))).))))..........(((((((...((.....))...))).))))....)))))))))..)))))))(...)

Thermodynamic Ensemble Prediction

(((((((....(((....)))(((.((((((({..{((({...,,{...((({{{...(((,...))),{((.(((((........))))).))}....}))))),},..|||},,,,({,,..||,(((......))),||,|})).,}..)}),,.})}}}}))).)))(((((((({........((((((((.,,......((((......))))........)))))))).....((((((((((,{{.....}).)))))).))))..........(((((((...{{.....}}...)))}})))....)))))))))..)))))))(...)