Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0003300

Sequence Length

491 nt

GC Content

0.4725

UAGAUAGGACUCUUGGUUUGGACAUACUACAUGGAUCAGUAAAUACCUGGGCACAGGACUUCAAAGCAAACACAGAUUCCCCCUCCCCCUUAAUAUUUAAGAAUUAAAAGAUGAUGAGAAAUAAGGACAAAAGCCAAGAGGAGGACAGUUCGCUACACAGCAAUGCAUCGAGUCACUCAGCCUCUGAAGAAGCUUCGGGUUCAGACUCAGGCAGUCAGUCGGAAAGUGAGCAGGGAAGUGAUCCAGGAAGUGGACAUGGCAGCGAGUCGAACAGCAGCUCUGAAUCUUCUGAGAGUCAGUCGGAAUCUGAGAGCGAAUCAGCAGGUUCCAAAUCCCAGCCAGUCCUCCCAGAAGCCAAAGAGAAGCCAGCCUCUAAGAAGGAACGGAUAGCUGAUGUGAAGAAGAUGUGGGAAGAAUAUCCUGAUGUUUAUGGGGUCAGGCGGUCAAACCGAAGCAGACAAGAACCAUCGCGAUUUAAUAUUAAGGAAGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-111.80 kcal/mol

Ensemble Metrics

Free Energy: -120.53

Frequency: 0.0000

Diversity: 181.12

Structure Visualization

Structure Prediction

MFE Structure Prediction

......(((.(((..(((((.......(((........)))....((((....)))).........)))))..))).)))..(((..((((((((((...(((((....((((...........((((.....((....))......))))(((....)))...(((((...(((((((((..((((((...))))))((((.(((((..((.(((((((.(........(..(((.....)))..)...).))).)))).))))))))))).((..((((....((((((.(((......((((((((.((.....))..))))))))...............))).))))))....))))..))...(((......)))........))))).))))....)))))...........((((((.((...)).))))))((((...))))..............))))..)))))))))))))))..)))

Thermodynamic Ensemble Prediction

,.{,,.(({.(((({{((((....,,{(.,.{{{,{{{,|.....((((....)))).........},,,,..,},.|||{{(((,.((((({((((,..,,{{{....||||.},.,......((.,....,}}..|.}}}}|...(((((((...,.||..{((.,,{{{((.,{,((({{{{{{{{..,||||}}|||,.|||||..||}.,,.||,,,..}}}}}}}.}|||,.}}})))}.,.,,)||||.||||.||}}}},,,,,.}}.}||((,,,{(({{{.,|,{||||,.((((((((.{{.....))..))))))))...,,...,||,}|||{|||{||.|{...,,{,..,,..,|||}}..,.,)),..))...)))}}}.}.,.}||}}}.}||||.......((((((.{|...,).))))))((({...})))...}.,,,,.,,.,)))),,,,|||},}}}}}}}).,}})