Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0003400

Sequence Length

553 nt

GC Content

0.4792

UAGAUAGGACUCUUGGUUUGGACAUACUACAUGGAUCAGUAAAUACCUGGGCACAGGACUUCAAAGCAAACACAGAUUCCCCCUCCCCCUUAAUAUUUAAGAAUUAAAAGAUGAUGAGAAAUAAGGACAAAAGCCAAGAGGAGGACAGUUCGCUACACAGCAAUGCAUCGAGUCACUCAGCCUCUGAAGAAGCUUCGGGUUCAGACUCAGGCAGUCAGUCGGAAAGUGAGCAGGGAAGUGAUCCAGGAAGUGGACAUGGCAGCGAGUCGAACAGCAGCUCUGAAUCUUCUGAGAGUCAGUCGGAAUCUGAGAGCGAAUCAGCAGGUUCCAAAUCCCAGCCAGUCCUCCCAGAAGCCAAAGAGAAGCCAGCCUCUAAGAAGGAACGGAUAGCUGAUGUGAAGAAGAUGUGGGAAGAAUAUCCUGAUGUUUAUGGGGUCAGGCGGUCAAACCGAAGCAGACAAGAACCAUCGCGAUUUAAUAUUAAGGAAGAGGCAAGUAGCGGGUCUGAGAGUGGGAGCCCAAAAAGAAGAGGCCAGAGGCAGCUGAAAAAACA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-127.20 kcal/mol

Ensemble Metrics

Free Energy: -138.25

Frequency: 0.0000

Diversity: 147.27

Structure Visualization

Structure Prediction

MFE Structure Prediction

......((.((((((.(((((((...((((.((............((((....))))........................((((..((((((((((...(((((....((((...........((((.....((....))......))))(((....)))...(((((...(((((((((..((((((...))))))((((.(((((..((.(((((((.(........(..(((.....)))..)...).))).)))).))))))))))).((..((((....((((((.(((......((((((((.((.....))..))))))))...............))).))))))....))))..))...(((......)))........))))).))))....)))))...........((((((.((...)).))))))((((...))))..............))))..)))))))))))))))..)))))).))))...)))).))).))))))))........((..(((...)))..)).........

Thermodynamic Ensemble Prediction

.......((((((((.(.((..({{.{{.{.(((((((.,.....((((....))))...................,(((((((((.{((((.{,(({....,{,....}})}.)}}}...,,,||.,....,}}..}.)))))...(((((((...{.((..(((...(((((..,.(((({,.((((...))))))))}..)))))..)))....)).)...))))))).))))).)))))))...,)))..)).).))).)))))...((((.((((((..((((((..,.,,,,,|.((((((((.((.....))..))))))))...{{{{{.,{.,{{(((,{({{.{{,.....,..,{..||{|||.....}},..}|,,.||||||.{.,.|||,||.|{{{{......,|||{||.||}.,,).)))))}({{{,..}))}..,{,,{,......,.||||..||{.....,.....,}}})}..}}.,)})))))).,.,)}))),||}....}}}})}.,,))))}}).))))........