Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0003600

Sequence Length

582 nt

GC Content

0.4897

UAGAUAGGACUCUUGGUUUGGACAUACUACAUGGAUCAGUCACUCAGCCUCUGAAGAAGCUUCGGGUUCAGACUCAGGCAGUCAGUCGGAAAGUGAGCAGGGAAGUGAUCCAGGAAGUGGACAUGGCAGCGAGUCGAACAGCAGCUCUGAAUCUUCUGAGAGUCAGUCGGAAUCUGAGAGCGAAUCAGCAGGUUCCAAAUCCCAGCCAGUCCUCCCAGAAGCCAAAGAGAAGCCAGCCUCUAAGAAGGAACGGAUAGCUGAUGUGAAGAAGGCAAGUAGCGGGUCUGAGAGUGGGAGCCCAAAAAGAAGAGGCCAGAGGCAGCUGAAAAAACAAGAAAAAUGGAAACAGGAACCCUCAGAAGAUGAACAGGAACAAGGCACCAGUGCAGAGAGUGAGCCAGAACAAAAAAAAGUAAAAGCCAGAAGACCUGUCCCCAGAAGAACAGUGCCCAAACCUCGUGUUAAAAAGCAGCCGAAGACUCAGCGUGGAAAGAGAAAAAAGCAAGAUUCUUCUGAUGAGGAUGAUGAUGAUGACGAAGCUCCCAAAAGGCAGACUCGUCGAAGAGCGGCUAAAAACGUUAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-135.50 kcal/mol

Ensemble Metrics

Free Energy: -145.86

Frequency: 0.0000

Diversity: 174.18

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((((.((.(((((((..((........(((.(((.((.((((((((((((((...))))))((((.(((((..((.(((((((.(........(..(((.....)))..)...).))).)))).)))))))))))......((((.((((((((((..((((.......))))..((......)).((((((...(((((.((((.(((.......(((..........((((.(((..........)))..))))..........))).......))).))).)..)))))((((........).)))(((......)))...............((....))))))))))))))))))...))))....)))).....)).)).)).))).)))............))..))))))).)).))))))..((((((((...(((......(((.((((....))))((.((....)).)).......)))......)))...)))))))).................(((((..((.((....)).))..)))))....((((........))))..

Thermodynamic Ensemble Prediction

..((((((.((.(((((((..((...,,...(((,(((.((,(((,{{{(((((,{..{||||||((((.,{{({.|((.,{{{{||,|,...||,|{.,|{,..}},)))}.,.,,)}}}}.}|||.||}}}}},,}}.},.}||(((.{(((((((((.,{{|{,.{({{{|||.{{,,...}}.,)})))))}...{((((.{{{{,(((,{.,...{({..,.,...,,,,,{||||.....,,...}},..}|||.|,|......}))...,.},}}),))).}..)}))){{{{........}.))){||.}}}..))}...............{{....},,},,}|))))))))))...}})}.....|||..,,.|},...}).))},)),............))..))))))).)).)))))).,((((((((...(((......(((.,,{,.....|||((.({....}).)).,,....)))......)))...))))))))....,,..........,(((((..((.((....)).))..))))),...{(((........))))..