Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0003800

Sequence Length

443 nt

GC Content

0.4108

UAGAUAGGACUCUUGGUUUGGACAUACUACAUGGAUCAGUAAAUACCUGGGCACAGGACUUCAAAGCAAACACAGAUUCCCCCUCCCCCUUAAUAUUUAAGAAUUAAAAGAUGAUGAGAAAUAAGGACAAAAGCCAAGAGGAGGACAGUUCGCUACACAGCAAUGCAUCGAGGUUAGGGAAAGUUUCUCCUGAAGAUGUAGAAUAUUUCAAUUGCCAACAGGAGCUGGCUUCAGAGUUGAAUAAACAGUAUCAGAUAGUAGAAAGAGUAAUAGCUGUGAAGACAAGUAAAUCUACAUUGGGUCAAACAGAUUUUCCAGGCCCUGAAGCAGAGACCACGAUUUGUAGCUUUAAAGAAACAACCUGCAUAUUUAGGAGGGGAGAAUCUGGAACUUCGAGAUUAUCAGCUAGAAGGUCUAAACUGGCUAGCUCAUUCCUGGUGCAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-94.30 kcal/mol

Ensemble Metrics

Free Energy: -104.52

Frequency: 0.0000

Diversity: 127.69

Structure Visualization

Structure Prediction

MFE Structure Prediction

....(((((...(((.((((((.....(((........)))....((((....))))..)))))).)))...((((((((((((((..((((.(((((..........))))).))))......((.(....)))...(((((((...(((.(((.((..(........)..))))).)))...)))))))...((((((((............((....)).(((.((((((.(((((.........(((......)))..........))))).))))).).)))...))))))))(((((..............)))))(((((((.(((......))).).)))))).....................))))))).))))))).......((.....))((((((..(((....)))..))))))...)))))......

Thermodynamic Ensemble Prediction

,,{.((({{,,,{{(,({{{{,....|||,.,|.,,,|},,....((((....))))..|||,||,,,....((((((((((((((.{((((.,.(((....{{{....}}),.)}}}...}}}||.......,,...,({((({...(((,(((,({..(..,,,.,,|.{|||}},|||,,,||}}|||,,.{(((((({.,.,{{,....{((,.,.||.|{||||((((.(((((.....,,..(,(,.....,,,,,....,,..))))).))))}.,,}}},..}))))}))|||{{.....,,}}},}}.))))}}}|.|||.,|.......,,}|},)),,,...},,,...,))}),...,..))))))).)))))))...,,,.||,....,,((((((..(((....)))..))))))...})))),}.}..