Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0004100

Sequence Length

361 nt

GC Content

0.4294

UAGAUAGGACUCUUGGUUUGGACAUACUACAUGGAUCAGUAAAUACCUGGGCACAGGACUUCAAAGCAAACACAGAUUCCCCCUCCCCCUUAAUAUUUAAGAAUUAAAAGAUGAUGAGAAAUAAGGACAAAAGCCAAGAGGAGGACAGUUCGCUACACAGCAAUGCAUCGAGGUUUGAAUUUUGGGAAGAUUUUGAAGAAGACCAUGGGAAGGGGAGAGAAAAUGGCUACCAGAGUCUUCAUAAGGUGCUAGAGCCUUUCCUUCUCCGGAGAGUCAAAAAAGAUGUGGAGAAAUCCCUUCCUGCUAAAGUGGAACAGAUUCUCAGGGUGGAGAUGUCAGCCCUUCAGAAACAGUAUUACAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-75.50 kcal/mol

Ensemble Metrics

Free Energy: -83.22

Frequency: 0.0000

Diversity: 107.86

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.(((((((((((((((........(((........)))....((((....))))........................(((....((((.(((((..........))))).)))).....)))....))))))))))(((.....)))(((....)))...(((((....(((((.((((.(((.(.((((....)))).)....(((((((((.(....((((.(((.............)))))))...))))))))))))).)))).)))))...)))))(((....)))..))))))))..((((.((.(.((((.(((((.((....)).)))))..)))).).)).))))..

Thermodynamic Ensemble Prediction

(((.((((((((((((((({......,{.,.,{,.,,.}},....((((....)))).,,{,...,........||,||,.,,,,,.{((((.,,(((....{{{....}}),.)}}}...}}})}.,..,})))))))){{{,....|}}(((....)))...{{{((,,,,((({{.{{{{,{{,,|.||||},.|,,||||.||((({((((((.(....((((.(((........,....)))))))...))))))))))))).)))},))}}}...}})})(((....)))..))))))))..((((.((.{.((((.(((((.((....)).)))))..)))).}.)).))))..