Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0005700

Sequence Length

358 nt

GC Content

0.4302

AUAGGACUCUUGGUUUGGACAUACUACAUGGAUCAGUAAAUACCUGGGCACAGGACUUCAAAGCAAACACAGAUUCCCCCUCCCCCUUAAUAUUUAAGAAUUAAAAGAUGAUGAGAAAUAAGGACAAAAGCCAAGAGGAGGACAGUUCGCUACACAGCAAUGCAUCGAGGUUUGAAUUUUGGGAAGAUUUUGAAGAAGACCAUGGGAAGGGGAGAGAAAAUGGCUACCAGAGUCUUCAUAAGGUGCUAGAGCCUUUCCUUCUCCGGAGAGUCAAAAAAGAUGUGGAGAAAUCCCUUCCUGCUAAAGUGGAACAGAUUCUCAGGGUGGAGAUGUCAGCCCUUCAGAAACAGUAUUACAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-73.20 kcal/mol

Ensemble Metrics

Free Energy: -81.57

Frequency: 0.0000

Diversity: 114.59

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((...))).))(((...(((((.(((((.((........((((....)))).(((((((((...((.((((((..((((...((((.(((((..........))))).))))......((((.....((....))......))))(((....)))........))))...))))))))....).))))))))..)))))))(((.((((((((....((((.(((.............)))))))....)))))))).))).(((((((...........(((....))).((((.........))))..)))))))(((((.((....)).)))))........)))))..)))

Thermodynamic Ensemble Prediction

,{,{(,{{|||,||{((...,{{{{.(((((.{{........((((....)))).((((((((,...,.,{{{(((,,(((({.{((((.,,{({,...,{{....}})}.}},,...,,,||.,.....||..,.)),}}...,||,(((....}))...,,.,,}}}},.,)}}}}}})},,.,.))))))))..)))))))((({(((((({(....((((.(((..,..........)))))))...,))))))))|}}}.|||||||........,,,{(({,,.||},{(((.,,....},)))}..)))))))(((((.((....)).)))))........,}}}}..)},