Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0010500

Sequence Length

381 nt

GC Content

0.5066

UCACUCAGCCUCUGAAGAAGCUUCGGGUUCAGACUCAGGCAGUCAGUCGGAAAGUGAGCAGGGAAGUGAUCCAGGAAGUGGACAUGGCAGCGAGUCGAACAGCAGCUCUGAAUCUUCUGAGAGUCAGUCGGAAUCUGAGAGCGAAUCAGCAGGUUCCAAAUCCCAGCCAGUCCUCCCAGAAGCCAAAGAGAAGCCAGCCUCUAAGAAGGAACGGAUAGCUGAUGUGAAGAAGAUGUGGGAAGAAUAUCCUGAUGUUUAUGGGGUCAGGCGGUCAAACCGAAGCAGACAAGAACCAUCGCGAUUUAAUAUUAAGGAAGAGGCAAGUAGCGGGUCUGAGAGUGGGAGCCCAAAAAGAAGAGGCCAGAGGCAGCUGAAAAAACA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-94.60 kcal/mol

Ensemble Metrics

Free Energy: -101.41

Frequency: 0.0000

Diversity: 117.17

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((..(((((((.....(((((((((((..((((.(((.....)))(((...((.((.((((.(((.((((.....)))))))(((.((..........)).)))((((.(((....))).))))..((((((((.((.....))..))))))))...)))).)))).)))(((((........(.(..(((...(((((.....)))..))...)))..).)..........))))).......((((((.((...)).))))))((((...))))...(((((........((((.((((....((......))...)))).))))))))).))))..))))))........)))))))))))))).))).......

Thermodynamic Ensemble Prediction

((({{..(((((((.....(((((((((((..((((.(((..,,.|||(({...{(.((.{(({.{((.((((.....))))))){{|.((..,,....,.)).))){{{,.{{{,||.}}},})}},.((((((((.({.....))..))))))))...}}}}.}}}}.|||({{{(,{.,{,..,.,...{{..,{{|||.....}},..}}...}|||{|.|...|||.||.|||||......,|||{{{.||....).))))))((({...})))...{{{{{........{{{(.,{{{.....,.....,,,,},.,},.,)}}))))).))))..))))))........)})))))))))),).))).......