Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0014200

Sequence Length

250 nt

GC Content

0.3960

AUGUGGGAAGAAUAUCCUGAUGUUUAUGGGGUCAGGCGGUCAAACCGAAGCAGACAAGAACCAUCGCGAUUUAAUAUUAAGGAAGAGGCAAGUAGCGGGUNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUCGGUGGCAGAUCUGAAGCGCCUGGGUGAACUGAUCCACAACAGCUGUGUGUCAGCAAUGCAGGAAUACGAAGAGCAGCUGAAAGAAAAUGCCAGCGAGG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-42.70 kcal/mol

Ensemble Metrics

Free Energy: -47.16

Frequency: 0.0007

Diversity: 29.82

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((.......))))((((((((((.((..((....((((...))))..))...)).))).))))......................((.....)).......................................................((.(((((..(((..(((.((((.((...(((((.((((.....)))).)))))..)).)))).............)))...)))...))))).)))))

Thermodynamic Ensemble Prediction

((((.......))))(((((({{{,..,,.|||...((((...})))..,,.,,}..,,|||,}|((.,{{{....,,...........,,,,.))},,,..................................................,((.(((((..(((..(((,((((.((...(((((.((((.....)))).)))))..)).))))..........,,.)))...)))...))))).)))))