Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0016900

Sequence Length

710 nt

GC Content

0.4183

AGAAAAAUGGAAACAGGAACCCUCAGAAGAUGAACAGGAACAAGGCACCAGUGCAGAGAGUGAGCCAGAACAAAAAAAAGUAAAAGCCAGAAGACCUGUCCCCAGAAGAACAGUGCCCAAACCUCGUGUUAAAAAGCAGCCGAAGACUCAGCGUGGAAAGAGAAAAAAGCAAGAUUCUUCUGAUGAGGAUGAUGAUGAUGACGAAGCUCCCAAAAGGCAGACUCGUCGAAGAGCGGCUAAAAACGUUAGUUACAAAGAAGAUGAUGACUUUGAGACUGACUCAGAUGAUCUCAUUGAAAUGACUGGAGAAGGAGUUGAUGAACAGCAAGAUAAUAGUGAAACUAUUGAAAAGGUCUUAGAUUCAAGACUGGGAAAGAAAGGAGCCACUGGAGCAUCUACUACUGUAUAUGCGAUUGAAGCUAAUGGCGACCCUAGUGGUGACUUUGACACUGAAAAGGAUGAAGGUGAAAUCCAGUACCUCAUCAAGUGGAAGGGUUGGUCUUACAUCCACAGCACAUGGGAGAGUGAAGAAUCCUUACAGCAACAGAAAGUGAAGGGCCUAAAAAAACUAGAGAACUUCAAGAAAAAAGAGGACGAAAUCAAACAAUGGUUAGGGAAAGUUUCUCCUGAAGAUGUAGAAUAUUUCAAUUGCCAACAGGAGCUGGCUUCAGAGUUGAAUAAACAGUAUCAGAUAGUAGAAAGAGUAAUAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-142.50 kcal/mol

Ensemble Metrics

Free Energy: -156.23

Frequency: 0.0000

Diversity: 174.41

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.....((....))......))(...................(((..((.(......).)).))).................(((((((....(((((...((((((((...(((......(((.((((....))))((.((....)).)).......)))......)))...))))))))....(((((........(((((..((.((....)).))..))))).((((.(((((....(((((((((.(((((..........))))).)))))))((((.((.(((((((..(((..((.....))..)))))))).........(((((((...)))))))....((((((......)))))).......((((..((((((((.((((.(((....))).)))).......(((...)))....))))))))..))))))))))))....(((((.((((........)))))))))..)).....))))).)))).)))))...((....((((..........))))....)).........(((((..((((.......))).)..)))))........((........))......((((....((((..((((.(.......).))))..))))....)))))))))..)))))))....(((.....)))..........................)

Thermodynamic Ensemble Prediction

.......{(....}}.....{|(({.....}},...}}.....{((.,((.(......}.)).)))...,,........,,..,((((((....((((({{{((((((((...(((......(((.,,{{.....|||((.({....}}.)).,.....)))......)))...)))))))).,|,|||{..,..,..,(((((..((.((....)).))..))))),...,,|{,,,.....,(((((((.(((((..........))))).)))))))|||,}|,,}}|||}|...,|,,{{.....,,..|||{.....}}}}....{((((((...))))))}....{(((((......})))))}}}....{(((..((((((((.((((.(((....))}.})))...,{..(((...}})...,)}))))))..)))}....||....,}((((,,((((........)))))))))..{({.,((((({..{{{{{(.(((.((.....)))))..)))).,))))))}.},,}.........(((((..((((.......))).)..)))))........,{........|}......{{{(.,..((({..{{{{,|,......).})})..))))..}.)))),))))..))))))),,..||||..,..}),,,.,,......,.,............