Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0019100

Sequence Length

400 nt

GC Content

0.4250

AACAGUGCCCAAACCUCGUGUUAAAAAGCAGCCGAAGACUCAGCGUGGAAAGAGAAAAAAGCAAGAUUCUUCUGAUGAGGAUGAUGAUGAUGACGAAGCUCCCAAAAGGCAGACUCGUCGAAGAGCGGCUAAAAACGUUAGUUACAAAGAAGAUGAUGACUUUGAGACUGACUCAGAUGAUCUCAUUGAAAUGACUGGAGAAGGAGUUGAUGAACAGCAAGAUAAUAGUGAAACUAUUGAAAAGGUCUUAGAUUCAAGACUGGGAAAGAAAGGAGGCCCUGAAGCAGAGACCACGAUUUGUAGCUUUAAAGAAACAACCUGCAUAUUUAGGAGGGGAGAAUCUGGAACUUCGAGAUUAUCAGCUAGAAGGUCUAAACUGGCUAGCUCAUUCCUGGUGCAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-84.70 kcal/mol

Ensemble Metrics

Free Energy: -92.53

Frequency: 0.0000

Diversity: 116.05

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((((..(((((((((....)))....(((((.((.((................))..)).)))))..)))))).....((((((..(((((.((......(((.(.(((......)))).)))......(((((((.(((((..........))))).))))))).(((((..((((....(((((..((.((.....((((.....))))....(((((((...)))))))....((((((...((((.....(((............)))))))...)))))).....((((..((....))..)))).)).))))))).....))))..))))))).)))))..))))))((((((..(((....)))..))))))......))).))).

Thermodynamic Ensemble Prediction

.....((((({..{((({{(({....,}}|{{|{{,,.,((.{{.,.....,,,......||..,,,|||||.,||}}|},{,.,,.,,,,{{(((.,{(,{{....}}|)}.|))))),..}}}),)))......(((((((.(((((..........))))).))))))),{{{{{,.||||,||...,|}.||,,...,|..{{{{.....}}}}....{((((((...))))))}....((((((...((((.....(((............))))))}.,.)))))).....|{{{.,||....}}..}}},(((,{.....,,),))),{{.,{{{{.{{.,,)),))))),))((((((..(((....)))..))))))...,,,))).))}.