Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0021300

Sequence Length

217 nt

GC Content

0.4562

AAAUAAUAGUGUAAUCCUUGCUGAUGAAAUGGGCCUAGGAAAGACCAUCCAGACCAUAUCAUUCCUCUCCUACCUGUUCCACCAACACCAGCUGUAUGGCCCCUUUCUUAUAGUCGUCCCUUUAUCCACCCUCACCUCAUGGCAGAGAGAGUUUGAAAUCUGGGCACCAGAGAUUAACGUAGUGGUUUACAUAGGUGACCUGAUGAGCAGAAAUACG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-34.30 kcal/mol

Ensemble Metrics

Free Energy: -39.54

Frequency: 0.0002

Diversity: 70.40

Structure Visualization

Structure Prediction

MFE Structure Prediction

........((((..((..(((((((((.((((..((.(((.......))))).)))).)))))..((.((((..(((.((((.....(((......)))...(((((((...(((((.....................))))).))))))).((((..(((((...)))))..))))....))))...))))))).)).......)))))).)))).

Thermodynamic Ensemble Prediction

........((((..,..,(((({((((,({((,,((,(((..,....}}}}}.}}}}.))}}}.,|,.,,{{,,(({,..,,,,,|,,,.,,{{{,.|},,,.|||}.|,,,||,{{,,,,....,,,,.{{{.,(....))..))),),|.{{((..(((((...)))))..))))....)))),..,.,,))),)},..,,,.)))))..}))).