Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0021400

Sequence Length

533 nt

GC Content

0.4184

GUUAGGGAAAGUUUCUCCUGAAGAUGUAGAAUAUUUCAAUUGCCAACAGGAGCUGGCUUCAGAGUUGAAUAAACAGUAUCAGAUAGUAGAAAGAGUAAUAGGCCCUGAAGCAGAGACCACGAUUUGUAGCUUUAAAGAAACAACCUGCAUAUUUAGGAGGGGAGAAUCUGGAACUUCGAGAUUAUCAGCUAGAAGGUCUAAACUGGCUAGCUCAUUCCUGGUGCAAAAAUAAUAGUGUAAUCCUUGCUGAUGAAAUGGGCCUAGGAAAGACCAUCCAGACCAUAUCAUUCCUCUCCUACCUGUUCCACCAACACCAGCUGUAUGGCCCCUUUCUUAUAGUCGUCCCUUUAUCCACCCUCACCUCAUGGCAGAGAGAGUUUGAAAUCUGGGCACCAGAGAUUAACGUAGUGGUUUACAUAGGUGACCUGAUGAGCAGAAAUACGAUACGGGAAUAUGAAUGGAUUCAUUCCCAAACCAAAAGAUUGAAGUUCAACGCACUUAUAACAACAUAUGAGAUCCUCUUGAAAGAUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-112.80 kcal/mol

Ensemble Metrics

Free Energy: -125.09

Frequency: 0.0000

Diversity: 173.45

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((.(((((...((((((((((.((((((....((((.(..(((((..(..(((.(((((((.(((......((..(.((........)).)..))....))).)))))))..)).)..)...)))..))..)...))))....)))))).))))))))))((.(((((.((...)).))))).))((((((..(((....)))..)))))).....((((((.......(((((.(((.........(((((.((((..((.(((.......))))).)))).))))).......)))))))).......))))))((((((.(....(((((....(((((((((....((((.(((..(((......))).))).((((..(((((...)))))..))))....)))).......))).)))..)))....)))))..).))))))((((........)))).))))).)))(......((.(((.........((((((......)))))).....))).))......)

Thermodynamic Ensemble Prediction

(((,(((({...{{((((((({.{(((((....{(((.,.,(({,.,,{{.{{{,(((((((.(((......,{..{.((........}}.}..}}....))).))))))).,,|.,,.,...,|||.}},.,...)}}}.,..)))))}.))))))))||((.{((((.((...}).))))}.}}((((((..(((....)))..))))))..{{{((((({{......,,((({(,,.....,}}}|{|{,.,||,}}||}|||,.,....}}}}}.,|||.}}}}}|||.||.}},|||||.......}}||}}{((((,|{,..,{{||{|||,||{({{{{{....{{{{.{{{.{(,...}}..))),},|.{{((..(((((...)))))..)))),...)})),,,,...})),)}},}}.})})})),..,,,,},,,|||||,|||{,,,,,}})}))))).}}}(......|||,.,,||||.,..((((((......))))))..,,,,}},,...,,.,)