Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0021700

Sequence Length

419 nt

GC Content

0.4224

GUUAGGGAAAGUUUCUCCUGAAGAUGUAGAAUAUUUCAAUUGCCAACAGGAGCUGGCUUCAGAGUUGAAUAAACAGUAUCAGAUAGUAGAAAGAGUAAUAGCUGUGAAGACAAGUAAAUCUACAUUGGGUCAAACAGAUUUUCCAGCUCAUAGUCGGAAGCCGGCACCCUCAAAUGAGCCCGAAUAUCUAUGUAAAUGGAUGGGACUCCCCUAUUCAGAGUGUAGCUGGGAAGAUGAAGCCCUCAUUGGAAAGAAAUUCCAGAAUUGCAUUGACAGCUUCCACAGUAGGAACAACUCAAAAACCAUCCCAACAAGAGAAUGCAAGGCCCUGAAGCAGAGACCACGAUUUGUAGCUUUAAAGAAACAACCUGCAUAUUUAGGAGGGGAGAAUCUGGAACUUCGAGAUUAUCAGCUAGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-91.50 kcal/mol

Ensemble Metrics

Free Energy: -101.23

Frequency: 0.0000

Diversity: 149.57

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((((.....(((((((((((.((((((....((((.....((.((..((((((((((((.(((((.........(((......)))..........))))).))))).((((((....))).)))((((.....))))..)))))))...)).))..(((.(((..(((....((((((....((((((....))))))))).))).((((((....(((.(((((....((((......((..(((((.....)))))))....))))..)))))..))))))))).........................)))..)))..)))..(((((((.(((......))).).))))))..))))....)))))).)))))))))))....)))))..((((.((........)).))))

Thermodynamic Ensemble Prediction

.{({((,....(((((((((({.((((((....{(((....{{,..,,((.((({(((((,.{((({.....,|..,.{,........,...,,.|,..{((((||{{|,{,,{{,..,{||,..,||{|....{,..||||||||||,{|,{||{|,,,)))))...,,,....|||{{{,...{((({(....}})))}|||.}}},}},,,},.||||||}|||||||||.||,.||,,...{(((((.....)))))}..,|}}.}}.,}},)}|||.,,,,.}}}}},,)))........,,,,.....}|},}|}}..}}},}||{,{||,{|,......,}}|}.}}}}},..)}}}....)))))).)))))))))))....))),|..((((.{(........)).))))