Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0021800

Sequence Length

299 nt

GC Content

0.3913

GUUAGGGAAAGUUUCUCCUGAAGAUGUAGAAUAUUUCAAUUGCCAACAGGAGCUGGCUUCAGAGUUGAAUAAACAGUAUCAGAUAGUAGAAAGAGUAAUAGCUGUGAAGACAAGUAAAUCUACAUUGGGUCAAACAGAUUUUCCAGUCCCUCAUAAGGAGCAGUGGGAAGUUGAUUUUAUUAGACAAACUGUUGACAAGACUUCGAGAAAGGGGGAAUCGAGUGCUUAUCUUCUCUCAGAUGGUGAGAAUGUUGGAUAUCCUGGCUGAAUACCUAACUAUUAAACACUAUCCUUUCCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-57.00 kcal/mol

Ensemble Metrics

Free Energy: -64.16

Frequency: 0.0000

Diversity: 90.37

Structure Visualization

Structure Prediction

MFE Structure Prediction

.....((((((((((((..(((((((((((............((....)).(((.((((((.(((((.........(((......)))..........))))).))))).).)))...)))))))...(((((.(((((((((((.(((((....))).).).)))))))).................))))))))....))))))))))(((((((..((.......))))))))).(((((((..((((((((.(((.(.....).))).))))).)))...)))))))))))))..

Thermodynamic Ensemble Prediction

.....(((((({(((((,,({{({(((,{{,,,,}}}....{(((.,.,..|.|}}|((({,(((({....,{{,,(.{,...,,|{{||....,,..,}})),|}}}}.|,|||,..}}))),}},.{|{,,|||{((((((((.({(((....})).).}.))))))))}..}}},}}}},....,)))))},}..}})))})))}}}(((((({..((.......}}})))))).(((((((..({{(((((.(((.{.....).))).))))).}))...)))))))))))))..