Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0023500

Sequence Length

439 nt

GC Content

0.4237

CUGUGAAGACAAGUAAAUCUACAUUGGGUCAAACAGAUUUUCCAGCUCAUAGUCGGAAGCCGGCACCCUCAAAUGAGCCCGAAUAUCUAUGUAAAUGGAUGGGACUCCCCUAUUCAGAGUGUAGCUGGGAAGAUGAAGCCCUCAUUGGAAAGAAAUUCCAGAAUUGCAUUGACAGCUUCCACAGUAGGAACAACUCAAAAACCAUCCCAACAAGAGAAUGCAAGGCCCUGAAGCAGAGACCACGAUUUGUAGCUUUAAAGAAACAACCUGCAUAUUUAGGAGGGGAGAAUCUGGAACUUCGAGAUUAUCAGCUAGAAGGUCUAAACUGGCUAGCUCAUUCCUGGUGCAAAUACGGGAAUAUGAAUGGAUUCAUUCCCAAACCAAAAGAUUGAAGUUCAACGCACUUAUAACAACAUAUGAGAUCCUCUUGAAAGAUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-102.10 kcal/mol

Ensemble Metrics

Free Energy: -110.23

Frequency: 0.0000

Diversity: 123.28

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((....)).))(..((((.((..(((((...((((((((((..(((....((((..(((.(((..(((....((((((....((((((....))))))))).))).((((((....(((.(((((....((((......((..(((((.....)))))))....))))..)))))..))))))))).........................)))..)))..))).))))....)))........((((..((....))..))))(((.(.......).)))))))))))))(((((((((..((...((((((..(((....)))..)))))).(((((((.........)))))))..(((((....))))).........))..))))))))).......(((((......))))))))))...))..))))..)

Thermodynamic Ensemble Prediction

((((....}}||)(..((({.{,..((((,...((((((((((,((((((.(((((...)))))...,,,..,,||||,,,...{(((((....}}|||||||.,,,.}},,}},.{{{||{,||||||||{.||,.||,....{(((((.....)))))}...,)}.}).,}},}||}}.}}}}.,,,,,..}}}........,{{,..,..|{|.((((,,(({.,(((((({.{{{......})).}.)))))}..}......))))))).}}}.}}}}))))}}}}}}}(((((((((..{{...((((((..(((....)))..)))))).(((((((.........)))))))..(({((....))})).........,}..)))))))))......{(((((......)))))),})),.,))..})))..)