Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0027300

Sequence Length

432 nt

GC Content

0.4306

GCCCUGAAGCAGAGACCACGAUUUGUAGCUUUAAAGAAACAACCUGCAUAUUUAGGAGGGGAGAAUCUGGAACUUCGAGAUUAUCAGCUAGAAGGUCUAAACUGGCUAGCUCAUUCCUGGUGCAAAAAUAAUAGUGUAAUCCUUGCUGAUGAAAUGGGCCUAGGAAAGACCAUCCAGACCAUAUCAUUCCUCUCCUACCUGUUCCACCAACACCAGCUGUAUGGCCCCUUUCUUAUAGUCGUCCCUUUAUCCACCCUCACCUCAUGGCAGAGAGAGUUUGAAAUCUGGGCACCAGAGAUUAACGUAGUGGUUUACAUAGGUGACCUGAUGAGCAGAAAUACGAUACGGGAAUAUGAAUGGAUUCAUUCCCAAACCAAAAGAUUGAAGUUCAACGCACUUAUAACAACAUAUGAGAUCCUCUUGAAAGAUAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-90.20 kcal/mol

Ensemble Metrics

Free Energy: -98.70

Frequency: 0.0000

Diversity: 140.14

Structure Visualization

Structure Prediction

MFE Structure Prediction

((..(((((((.(((......))).).))))))..)......)((.....((((((((((.........(((((((((..((...((((((..(((....)))..)))))).....((((((.......(((((.(((.........(((((.((((..((.(((.......))))).)))).))))).......)))))))).......))))))..((((.(....(((((....(((((((((....((((.(((..(((......))).))).((((..(((((...)))))..))))....)))).......))).)))..)))....)))))..).))))((((..(((((....))))))))).......))..)))))))))......((((((......)))))).)))))))))).....))

Thermodynamic Ensemble Prediction

({..(({((({{,{.......|||{|.|||}},..,......,||}}...{{((((((((((,,,(((,((...||,|},},.,,((((((..(((....)))..))))))..{{{(((((({......,,(((,(,,.....,}}}|{|{,.,||,}}||}|||,.,....))))),,,,,.}},))}}}}}}})),|||||.......}}||,},{(((,|{,...{{{{{|,|,{{{(((({{....{{({.(((.{(,,..}}..))).},|.{{({..(((((...)))))..)))),...)})),.,,...})),)}}.,},})})})),....,.,,,,((((,.,((({....}))))))))...........}}},.,}))}..,,.((((({......})))))..}}))}))}}..,,.))