Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0031800

Sequence Length

460 nt

GC Content

0.4652

AUACGGGAAUAUGAAUGGAUUCAUUCCCAAACCAAAAGAUUGAAGUUCAACGCACUUAUAACAACAUAUGAGAUCCUCUUGAAAGAUAAGACUGUGCUGGGCAGUAUUAACUGGGCCUUUCUGGGAGUGGAUGAAGCCCAUCGGUUGAAGAAUGAUGACUCUUUAUUGUAUAAAACUCUGAUUGAUUUCAAGUCCAACCAUAGGCUCCUGAUUACGGGGACCCCUCUUCAGAAUUCCCUCAAAGAGCUCUGGUCCUUGCUGCACUUUAUUAUGCCGGAGAAUGUAAGGAGAGGAUGAGGCCCGUGAAAAAGGCACUGAAACAGCUCGACAAACCUGACAAGGGGCUCAACGUGCAAGAACAGCUGGAACACACCCGGAACUGCCUGCUGAAAAUCGGAGACCGGAUAGCCGAGUGCCUUAAAGCCUACUCAGAUCAGGAGCACAUCAAACUCUGGAGGAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-104.60 kcal/mol

Ensemble Metrics

Free Energy: -116.66

Frequency: 0.0000

Diversity: 148.89

Structure Visualization

Structure Prediction

MFE Structure Prediction

....((((..(((((....)))))))))...........((((...))))....((((((......)))))).((((((.((.((.(((.(((((.....))))).))).))((((...((((....))))....))))...(((((....(((((((....))))))).....(((.(((......)))))).)))))....(((((((((((((((....((((((((((.(((.......))).))))).((((((....((((........))))...)))))))))))......)))))....((((((((......((.((.....(((......))).....)).)).....(((((((.......))))..))).((.((((...))))))..(((....)))))))))))............)))))))))).........)).)))))).

Thermodynamic Ensemble Prediction

....((((,.,((({....}))))))))...........{{{,...}}},....((((((......)))))).((((((.({.,{.,,..{((((,.,,,|||||.,,,.}|((((,{,((({,...|||}.||,}}})|,,(((((,{,{,{{{,,,.,,,)))}},}.....,{,.{({......))),))}))})),.,}((((((((((((({{{,{{((({.(({{..,{,,,{,...|||{{((|{((((({{....{{{{........))))...))}}))}}}))},,}}|}|}}},...,{||{{{{.....,||}|,.....{||,,..))))}.},..}),||.....{{{((((.......))))..}}},||,{{{,...||||,,.,|||....))}|}}|}}}}...},...,,,.}))))))))).,,,,....)).)))))).