Forensic RNA Knowledge Base

Sequence Details

BLAST PRIMER

Symbol

hsa_CHD2_0036200

Sequence Length

222 nt

GC Content

0.5225

CGUCUGGAUGGUUCCAUCAAGGGAGAAAUCCGAAAACAGGCACUGGACCACUUCAAUGCAGAUGGGUCUGAGGACUUCUGUUUCCUGCUCUCGACAAGGGCUGGUGGCCUGGGAAUCAAUUUGGCUUCAGCGGACACAGUCGUCAUCUUUGACUCUGACUGGAACCCCCAGAAUGACUUGCAGGCACAAGCCCGAGCGCAUAGAAUUGGUCAAAAGAAGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-67.60 kcal/mol

Ensemble Metrics

Free Energy: -71.62

Frequency: 0.0015

Diversity: 44.80

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((((((((....))))...(((....))).....))))).((((((((.(((...(((((..((((....)))))))))....(((.(((.....(((((.(((.((((.((.(((.(((((.....(.((...(((((((((....))))...)))))...)))))))).))).)).))))))).)))))))).)))..))).)))))........)))

Thermodynamic Ensemble Prediction

.(((((((({.{{{|,,,...|||,..,))).....})))).((((((((.(((.(((({({.,(({{..{{||},,,,,,.}}}}(({(,,.....(((((.((,{((((.((.(((.(((((.,,,,(,((...{((((((((....)))),,,)}))),,.,},))))).))).)).))))))).))))))))})))).))).)))))........)))